Metaviromic analysis of Alstroemeria pulchella from South Africa - SRA

SRX8949611: Metaviromic analysis of Alstroemeria pulchella from South Africa
1 ILLUMINA (Illumina HiSeq 2500) run: 746,911 spots, 169.8M bases, 68.8Mb downloads

Design: Libraries were generated using the RNAtag-seq library prepararion protocol of Shishkin et al (2015) Simultaneous generation of many RNA-seq libraries in a single reaction. Nature Methods, 12(4):323-5. doi: 10.1038/nmeth.3313.

Submitted by: Agricultural Research Council

Study: First report of Alstroemeria mosaic virus in South Africa

PRJNA657267 • SRP277554 • All experiments • All runs

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This study represents the first report of Alstroemeria mosaic virus on Alstroemeria pulchella in South Africa. The data was generated through the RNAtag-seq approach of Shishkin et al (2015).

Sample:

SAMN15823596 • SRS7204889 • All experiments • All runs

Organism: Alstroemeria pulchella

Library:

Name: 19-4000

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: METATRANSCRIPTOMIC

Selection: DNase

Layout: SINGLE

Runs: 1 run, 746,911 spots, 169.8M bases, 68.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR12455222	746,911	169.8M	68.8Mb	2021-09-01

ID:: 11634180

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